those are the correct caps.
and the soldering is fine. it’s just a little heavy. like i said the assembly house put the wrong caps on so these were hand-replaced.
in short: i’m having a difficult time coming up with ideas why there would be noise on some ports and not others. it may also be something with solders on the USB ports, or robustness of the USB ports themselves (though these are expensive molex ports).
i’ll keep looking into it and thinking on it, but best you just note what works and stick with that. i wouldn’t worry that there’s some deeper problem at hand. and of course i’ll post when i have a complete fix.