I did a manual workaround where I used single leg components for pin headers and kept really good notes while laying out the board. One thing that can help is to lay the components on top of each other, and then move them all in one lot onto the second half of the construction.
There might be a kicad plugin for this, but I don’t know. I wasn’t doing anything super sophisticated with it, just resistors for the LEDs, so if you were going to do something more complex, then you might want to look into a better layout solution.
here’s some kicad screenshots for reference.